Index

_

__init__() (lakeview.alignment.AlignedSegment method) (lakeview.annotation.AnnotationRecord method) (lakeview.GenomeViewer method) (lakeview.plot.BasePairFormatter method) (lakeview.plot.PrunedMaxNLocator method) (lakeview.region_notation.InvalidRegionNotationError method)

A

AlignedSegment (class in lakeview.alignment)

AnnotationRecord (class in lakeview.annotation)

B

Base (in module lakeview._type_alias)

BasePairFormatter (class in lakeview.plot)

C

clear() (lakeview.GenomeViewer method)

Color (in module lakeview._type_alias)

D

deletions (lakeview.alignment.AlignedSegment property)

draw_rigid_polygon() (in module lakeview.plot)

F

from_limits() (lakeview.plot.BasePairFormatter class method)

G

GenomeViewer (class in lakeview) get_aligned_pairs() (lakeview.alignment.AlignedSegment method) get_aligned_query_sequence() (lakeview.alignment.AlignedSegment method) get_aligned_reference_position() (lakeview.alignment.AlignedSegment method) get_ax_size() (in module lakeview.plot)

get_cmap_colors() (in module lakeview.plot) get_random_colors() (in module lakeview.plot) get_region_notation() (in module lakeview.region_notation) get_tag() (lakeview.alignment.AlignedSegment method) GroupIdentifier (in module lakeview._type_alias)

H

hard_clipping (lakeview.alignment.AlignedSegment property)

has_tag() (lakeview.alignment.AlignedSegment method)

I

Identifier (in module lakeview._type_alias) insertions (lakeview.alignment.AlignedSegment property) InvalidRegionNotationError is_forward (lakeview.alignment.AlignedSegment attribute)

is_mapped (lakeview.alignment.AlignedSegment attribute) is_proper_pair (lakeview.alignment.AlignedSegment attribute) is_reverse (lakeview.alignment.AlignedSegment attribute) is_secondary (lakeview.alignment.AlignedSegment attribute) is_supplementary (lakeview.alignment.AlignedSegment attribute)

L

lakeview module lakeview._type_alias module lakeview.alignment module lakeview.annotation module

lakeview.plot module lakeview.region_notation module lakeview.remote module LinkIdentifier (in module lakeview._type_alias)

M

mapping_quality (lakeview.alignment.AlignedSegment attribute) mismatched_bases (lakeview.alignment.AlignedSegment property) modified_bases (lakeview.alignment.AlignedSegment property) module lakeview lakeview._type_alias lakeview.alignment lakeview.annotation lakeview.plot lakeview.region_notation lakeview.remote

N

normalize_region_notation() (in module lakeview.region_notation)

P

parse_region_notation() (in module lakeview.region_notation)

Point (in module lakeview._type_alias) PrunedMaxNLocator (class in lakeview.plot)

Q

query_alignment_length (lakeview.alignment.AlignedSegment attribute)

query_name (lakeview.alignment.AlignedSegment attribute) query_sequence (lakeview.alignment.AlignedSegment property)

R

reference_end (lakeview.alignment.AlignedSegment attribute) reference_sequence (lakeview.alignment.AlignedSegment property)

reference_skips (lakeview.alignment.AlignedSegment property) reference_start (lakeview.alignment.AlignedSegment attribute) Region (in module lakeview._type_alias)

S

scientific_notation() (in module lakeview.plot)

soft_clipping (lakeview.alignment.AlignedSegment property)

T

tick_values() (lakeview.plot.PrunedMaxNLocator method)

W

wrapped (lakeview.alignment.AlignedSegment attribute)