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Lakeview 0.1.3 documentation
Contents:
Tutorials
Quick start guide
Customising alignment layout
Interactive visualization
Gallery
Structural variation in the IGH region
Translocation in the SKBR3 cell line
GAPDH
Iso-Seq
SNURF
differentially methylated region
Illumina exome sequencing
Lakeview logo
API Reference
lakeview.SequenceAlignment
lakeview.GeneAnnotation
lakeview.GenomeViewer
lakeview.plot
lakeview.remote
lakeview.region_notation
Type aliases
.rst
.pdf
Tutorials
Tutorials
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Contents:
Quick start guide
Install Lakeview
Import Lakeview
Get the BAM file
Load data from the BAM file
Create an empty
GenomeViewer
Plot alignment data
Save the output figure
Customising alignment layout
The default
Showing/hiding specific visual elements
Matplotlib keyword arguments
Data-dependent customization
Interactive visualization