Lakeview 0.1.3 documentation

Contents:

  • Tutorials
    • Quick start guide
    • Customising alignment layout
    • Interactive visualization
  • Gallery
    • Structural variation in the IGH region
    • Translocation in the SKBR3 cell line
    • GAPDH Iso-Seq
    • SNURF differentially methylated region
    • Illumina exome sequencing
    • Lakeview logo
  • API Reference
    • lakeview.SequenceAlignment
    • lakeview.GeneAnnotation
    • lakeview.GenomeViewer
    • lakeview.plot
    • lakeview.remote
    • lakeview.region_notation
    • Type aliases
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  • .rst

Tutorials

Tutorials#

Contents:

  • Quick start guide
    • Install Lakeview
    • Import Lakeview
    • Get the BAM file
    • Load data from the BAM file
    • Create an empty GenomeViewer
    • Plot alignment data
    • Save the output figure
  • Customising alignment layout
    • The default
    • Showing/hiding specific visual elements
    • Matplotlib keyword arguments
    • Data-dependent customization
  • Interactive visualization

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By Jia-Yuan Zhang
© Copyright 2022, Jia-Yuan Zhang.